PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_63.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 175aa    MW: 20036.4 Da    PI: 5.0559
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_63.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-3381161128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrF Ptdeelvv++L+           +vi+++d+y ++Pw+L+ k+ ae ++wyf+s+r         +nr t++g 
  evm.model.supercontig_63.29   8 LPPGFRFYPTDEELVVHFLH-----------HVIPDLDLYPYDPWELDGKALAEGNRWYFYSRRT--------QNRNTSNGH 70 
                                  79****************96...........46999***********977778899******984........58999**** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wk+ g d++v++++g+ vg+kk +vfy g+ap g kt+W+mheyrl
  evm.model.supercontig_63.29  71 WKSMGIDEPVITSSGKRVGMKKYFVFYVGEAPAGIKTNWIMHEYRL 116
                                  ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-465146IPR003441NAC domain
PROSITE profilePS5100535.6038148IPR003441NAC domain
PfamPF023654.1E-239116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGDGNVNLPP GFRFYPTDEE LVVHFLHHVI PDLDLYPYDP WELDGKALAE GNRWYFYSRR  60
TQNRNTSNGH WKSMGIDEPV ITSSGKRVGM KKYFVFYVGE APAGIKTNWI MHEYRLPDSA  120
SSSRSTKRSA RAKTLDYSKW VVCRVYEDDD GTELSCLDEV FLSLDDLDEI SLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-42515317173NAC domain-containing protein 19
3swm_B8e-42515317173NAC domain-containing protein 19
3swm_C8e-42515317173NAC domain-containing protein 19
3swm_D8e-42515317173NAC domain-containing protein 19
3swp_A8e-42515317173NAC domain-containing protein 19
3swp_B8e-42515317173NAC domain-containing protein 19
3swp_C8e-42515317173NAC domain-containing protein 19
3swp_D8e-42515317173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_63.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896566.11e-124NAC domain-containing protein 104
SwissprotQ8GWK63e-73NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A061E1M17e-93A0A061E1M1_THECC; NAC domain protein, IPR003441 isoform 1
STRINGevm.model.supercontig_63.291e-128(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-73xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]