PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_62.24

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Protein Properties

Length: 372aa MW: 42307.9 Da PI: 6.4384

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_62.24	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.6	2.3e-18	19	108	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 +k ++ps+v+ +l l+k+f+++h + +++k ++ledesg+++e k+ ++k + l++GW++F a++L egD++vF+ evm.model.supercontig_62.24 19 IKCMLPSHVTGGFWLGLSKQFCSNHL-P-KQDKIIILEDESGEKFETKFLVDKVG----LSGGWRGFSMAHRLVEGDVLVFH 94 6899****************8884.3.37789***********666655....********************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 l+++ +f +v ++r+ evm.model.supercontig_62.24 95 LVESCKF--KVYIVRS 108 *998888..8888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-22	12	110	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.4E-20	13	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.61E-24	16	107	No hit	No description
SMART	SM01019	9.3E-20	18	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.167	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-16	19	108	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MERAKEVQAN LSCEFPSMIK CMLPSHVTGG FWLGLSKQFC SNHLPKQDKI IILEDESGEK 60 FETKFLVDKV GLSGGWRGFS MAHRLVEGDV LVFHLVESCK FKVYIVRSNG TDEVDGALGL 120 LKLDACSRET DFVKDIGICV REVKPLKLED VSEENVRNNS LMFCDTKPIP EPQHPRSKNL 180 EPEVQDGIRL SDSFIEFKQV KSFKDFSICV NGLIINSMFS KHLLVKYYEL CCSQKSFLHD 240 HLLEGLNCGL ITGIITETIN IADAIRASKL TTSQEDFFIW EKTLKAFGDL GMNVGFLHVR 300 LYELLRLALK SNRYKAARLE WNQAAEEKRV IEAKIVELNM TMHRLDTEIK SLARNDHELE 360 LKFQEVANAP W*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MERAKEVQAN LSCEFPSMIK CMLPSHVTGG FWLGLSKQFC SNHLPKQDKI IILEDESGEK  60
FETKFLVDKV GLSGGWRGFS MAHRLVEGDV LVFHLVESCK FKVYIVRSNG TDEVDGALGL  120
LKLDACSRET DFVKDIGICV REVKPLKLED VSEENVRNNS LMFCDTKPIP EPQHPRSKNL  180
EPEVQDGIRL SDSFIEFKQV KSFKDFSICV NGLIINSMFS KHLLVKYYEL CCSQKSFLHD  240
HLLEGLNCGL ITGIITETIN IADAIRASKL TTSQEDFFIW EKTLKAFGDL GMNVGFLHVR  300
LYELLRLALK SNRYKAARLE WNQAAEEKRV IEAKIVELNM TMHRLDTEIK SLARNDHELE  360
LKFQEVANAP W*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_62.24

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896622.1	0.0	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1Q3C5S4	1e-161	A0A1Q3C5S4_CEPFO; B3 domain-containing protein/DUF724 domain-containing protein
STRING	evm.model.supercontig_62.24	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16718	9	11
Representative plant	OGRP7667	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_62.24