PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.428
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 506aa    MW: 56332.6 Da    PI: 6.8297
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.428genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.6e-28263317156
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                  k +++WtpeLH++Fv+ave+L G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  evm.model.supercontig_6.428 263 KMKVDWTPELHKKFVQAVEKL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 317
                                  5689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.46260319IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-27261319IPR009057Homeodomain-like
SuperFamilySSF466898.96E-19262320IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25263317IPR006447Myb domain, plants
PfamPF002495.6E-9266315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVFTANDLSG WKDFPKGLRV LLLDEDIGSA AEIKSKLEAM NYIVHFDIRS LVQLSSCTNR  60
SLRTNYEIYG NMWCIRFDRI QAFNAGESNL SESLKPVKQS LVSMLQLKLE NQKPKNNEAD  120
ERENVALTDE KEQEQSVGSD KYPAPSTPQL KQGARLLDDG DCQDHIKSST EKDSVEQVGE  180
CKSVETTSGD FIAAVNGQVV QPEEVLDIIV KEEVGVADGL KSGGNMHPCA QSKDGPNDSH  240
GFNNPSKASG LHSTFGNKAN RKKMKVDWTP ELHKKFVQAV EKLGVDQAIP SRILELMKVE  300
GLTRHNVASH LQKYRMHRRN ILPKEDDRRW VQPRDQTQRS YYVQKPIMAY PPYHSSPATA  360
AGPVYPIWGA TTGSPHGVQM WGSIGYPQWQ ATESWHWKPY AGMHADAWGC PMMPPLHGPF  420
PTSPQNASGF HCMATTDNGC RMPYPNSFDS YPAEEIDRVV KEAINKPWLP LPLGLKPPST  480
DSVLTELSRK GISTVPHIVD GTDQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-17268317655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908391.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-95APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A438JZR00.0A0A438JZR0_VITVI; Two-component response regulator-like APRR2
STRINGevm.model.supercontig_6.4280.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-99ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]