PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.255
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 153aa    MW: 17725.9 Da    PI: 4.9859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.255genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-1058107154
                                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  r++ +  rE+ RRd++N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  evm.model.supercontig_6.255  58 RKVQKADREKLRRDQLNEQFLELANTLDPD----RPKNDKATILTDTIQMLKDL 107
                                  5777889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.08457107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-1357128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1258130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-558111No hitNo description
PfamPF000103.0E-858107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-663113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDQWNARDFS ESVVAEFGPS TSMPSSNHAQ NQNSMPERSR RRPEVEVKVE VKDPITARKV  60
QKADREKLRR DQLNEQFLEL ANTLDPDRPK NDKATILTDT IQMLKDLTSE VNRLKVEYDA  120
LSEESRELMQ EKNEIREEKA SLKSELIHIQ FL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907855.11e-98transcription factor bHLH121-like isoform X3
SwissprotQ9LT238e-41BH121_ARATH; Transcription factor bHLH121
TrEMBLD7SNZ54e-58D7SNZ5_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_6.2551e-106(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-43bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]