PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.244
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 313aa    MW: 35025.1 Da    PI: 6.4481
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.244genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-192889257
                                 T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                     Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 ++R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  evm.model.supercontig_6.244 28 STRWTPTSDQIRILKDLYYNsgVRSPTADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89
                                 58*****************8789*************************************97 PP
2Wus_type_Homeobox114.64.9e-372791265
            Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                 ++tRWtPt++Qi+iL++ly+ sG+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  evm.model.supercontig_6.244 27 SSTRWTPTSDQIRILKDLYYnSGVRSPTADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91
                                 789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-112392IPR009057Homeodomain-like
PROSITE profilePS5007110.3492490IPR001356Homeobox domain
SMARTSM003893.5E-52694IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-72989IPR009057Homeodomain-like
CDDcd000861.79E-62991No hitNo description
PfamPF000466.3E-172989IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEAHQQLNED SGGNKTGGGG NFLCRQSSTR WTPTSDQIRI LKDLYYNSGV RSPTADQIQR  60
ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTNSSNTT MSSEHVLLPM QRPSLPHSQA  120
HNNGVRKPNI NDQDSLHHKF SNTSYSSGIP ASAGVLTAPG AQMGNYAYGS VTMENRFRDC  180
SISPTGSSVA SGNGGPLNHH WVSIDHYSTS YNFFEKRKSV LTETIEEEEE EEEEDEQEEE  240
GGSSYYQEKE TLPLFPMHGE DHINGGFCRP SPSTGGYYRG WYRPDDGNYY GGSHASLELS  300
LNTYTGRSPD PL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.244
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908316.11e-172protein WUSCHEL, partial
SwissprotQ8LL116e-80WUS_PETHY; Protein WUSCHEL
TrEMBLA0A1Q3D8E16e-93A0A1Q3D8E1_CEPFO; Homeobox domain-containing protein
STRINGevm.model.supercontig_6.2440.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-57WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]