PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_55.51 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24539.7 Da PI: 11.0672 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.5e-14 | 55 | 101 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR riNs f+ Lr++lP++ +K++Ka++L +A++ + +L evm.model.supercontig_55.51 55 KKHSEAERRRRFRINSQFAALRTILPNL-----TKMDKASVLGEAIQQVTQL 101 68*************************9.....9************977776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.62E-11 | 55 | 106 | No hit | No description |
Pfam | PF00010 | 3.4E-12 | 55 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 56 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 56 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.61E-5 | 138 | 205 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.7E-5 | 139 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MRQSASHYPP RTYTMRSSLF HGRVSNNAKQ CSFLNGILST KPAISKAEAL AIAAKKHSEA 60 ERRRRFRINS QFAALRTILP NLTKMDKASV LGEAIQQVTQ LKKTVKELEL DSCGKSKRLF 120 PCEQDSLNLK YCNKEKTLVK IAFSCEDRLA LISNITEALK STKGKILRAE MVIVGGRARH 180 VLWIQGFLGN EGIVRLKRML RAIMDSPSSP GNSKHRVSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 65 | ERRRRF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_55.51 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897442.1 | 1e-149 | transcription factor bHLH131 | ||||
TrEMBL | A0A067FBL5 | 5e-61 | A0A067FBL5_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_55.51 | 1e-161 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13939 | 20 | 25 | Representative plant | OGRP14910 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 3e-41 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_55.51 |