PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_42.167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 203aa MW: 22968.4 Da PI: 4.5886 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.8 | 5.7e-29 | 8 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGf+F Ptdeel++++L +k+++ +++ i++++ y+++P++L+ k+ + +++yfF++ +k+ +g + t++g evm.model.supercontig_42.167 8 LPPGFQFCPTDEELITHFLYRKASRLPCHP--NIPHLHFYRSDPSHLQGKAVVSGNRYYFFTQVGSKEINGGK----TENG 82 79**********************999777..6**************9666677899*******999988765....667* PP NAM 82 yWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWka +++e ++ ++ l+g+kk Lvf+ g+ p++ +t+W+m++y+l evm.model.supercontig_42.167 83 YWKAVDEEEEEEEEgeaifsrgNKLLIGTKKHLVFFLGQPPSAIQTNWFMEQYHL 137 ****9998887776455555444445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-33 | 4 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.363 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-19 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGDGSMNLPP GFQFCPTDEE LITHFLYRKA SRLPCHPNIP HLHFYRSDPS HLQGKAVVSG 60 NRYYFFTQVG SKEINGGKTE NGYWKAVDEE EEEEEEGEAI FSRGNKLLIG TKKHLVFFLG 120 QPPSAIQTNW FMEQYHLPTS NITSSERKKW VYVEFMMVGE GNSQGFSHSS SGDNDEDGIE 180 LSCLDEMFFS LHDDLEDVTS PN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-26 | 2 | 137 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_42.167 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899969.1 | 1e-151 | NAC domain-containing protein 104-like | ||||
TrEMBL | A0A1L2DX18 | 1e-134 | A0A1L2DX18_CARPA; NAC1 protein | ||||
STRING | evm.model.supercontig_42.167 | 1e-150 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 6e-42 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_42.167 |