PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_414.3
Common NameMADS3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28078.1 Da    PI: 9.5262
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_414.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32958150
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  evm.model.supercontig_414.3  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                                 79**********************************************95 PP
2K-box1011.6e-3381171999
                        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                    e++++s++qe+akLk+++e+Lqr+qRhllGedL++L++keLq+Le+qLe +l   R++K+++++eq+e+l+k+e++l + 
  evm.model.supercontig_414.3  81 SLERETQSWYQEVAKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALALARQRKTQIMIEQMEDLRKRERQLGDL 162
                                  456789**************************************************************************** PP

                        K-box  91 nkaLrkkle 99 
                                  nk+L+ kle
  evm.model.supercontig_414.3 163 NKQLKIKLE 171
                                  *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.697161IPR002100Transcription factor, MADS-box
CDDcd002651.69E-45274No hitNo description
SuperFamilySSF554551.57E-34289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.56486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGST  60
GIAKTLERYQ RCSSFNPQEN SLERETQSWY QEVAKLKAKY ESLQRTQRHL LGEDLGPLNI  120
KELQNLEKQL EGALALARQR KTQIMIEQME DLRKRERQLG DLNKQLKIKL EAEGQSFKAM  180
QGLWSSGAAA GPSTSHFALH PSQSNPMNCD PEPVLQIGYQ QYVGSDEGPS VPKSMACETN  240
FIQGWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22169169MEF2C
5f28_B2e-22169169MEF2C
5f28_C2e-22169169MEF2C
5f28_D2e-22169169MEF2C
6byy_A2e-22180178MEF2 CHIMERA
6byy_B2e-22180178MEF2 CHIMERA
6byy_C2e-22180178MEF2 CHIMERA
6byy_D2e-22180178MEF2 CHIMERA
6bz1_A3e-22180178MEF2 CHIMERA
6bz1_B3e-22180178MEF2 CHIMERA
6bz1_C3e-22180178MEF2 CHIMERA
6bz1_D3e-22180178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_414.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6599920.0EU659992.1 Carica papaya MADS3 (MADS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909947.10.0agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-143MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLB2ZG430.0B2ZG43_CARPA; MADS3
STRINGevm.model.supercontig_414.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-121AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]