PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_4.223
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 458aa    MW: 49584.3 Da    PI: 6.7682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_4.223genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08106127426
                                  ---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                  + C+++ + G C yGd C+F H+
  evm.model.supercontig_4.223 106 KVCNYWVQ-GKCDYGDECRFLHS 127
                                  68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.742550IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5632551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7103127IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5104128IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-6106127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-7106126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.6E-42127413IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.88E-43132181IPR017986WD40-repeat-containing domain
SMARTSM003201.9E-5133172IPR001680WD40 repeat
PfamPF004003.9E-4136172IPR001680WD40 repeat
PROSITE profilePS5008213.75140181IPR001680WD40 repeat
PROSITE profilePS5029419.986140389IPR017986WD40-repeat-containing domain
PRINTSPR003207.2E-6159173IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780159173IPR019775WD40 repeat, conserved site
SMARTSM003209.7212249IPR001680WD40 repeat
SuperFamilySSF509784.88E-43219414IPR017986WD40-repeat-containing domain
SMARTSM003200.0017256293IPR001680WD40 repeat
PfamPF004000.0071260293IPR001680WD40 repeat
PROSITE profilePS5008211.745263302IPR001680WD40 repeat
PRINTSPR003207.2E-6280294IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0016296333IPR001680WD40 repeat
PfamPF004000.095298332IPR001680WD40 repeat
PRINTSPR003207.2E-6320334IPR020472G-protein beta WD-40 repeat
SMARTSM003207.9337380IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDLDGQGGGK RVFHRLGGQP APAAGTKGKV CFHWRAGKCS RHPCPYLHRE LPPPNPAAAV  60
VNGSAPKRFA DDSGFSGRGH RRSPGFNANN TWGRVGGNRA VRKAEKVCNY WVQGKCDYGD  120
ECRFLHSWSL GDSFSLLTQL EGHKKLVSGI SLPSGSDKLY TGSKDETVRV WDCASGQCMH  180
IINLGGEVGC MISEGPWVFV GMPNFVKAWN IQTSSDQSLS GPAGQVYALV VGNDLLFAGT  240
QDGAILAWRF SVVTNSFEPA ASLTGHSLAV VSLIVGANKL YSGSMDHSIR VWSLETLQCI  300
QTLMEHTSVV MSLLCWDQFL LSCSLDQTIK VWVATESGNL EVTYTHNEEH GLLALCGMHD  360
LEAKPVLLCA CNDNSVRVYD LPSFSEKGKI FAKQEIRAIQ VGPGGLFFTG DGTGLGNAAN  420
FSLREELEVE NVSFEFLALD IQQHQALYYL AVCCSIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211193838323Tako8
6g6n_A4e-211193838323Tako8
6g6n_B4e-211193838323Tako8
6g6n_C4e-211193838323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_4.223
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908885.10.0zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A251KR250.0A0A251KR25_MANES; Uncharacterized protein
STRINGevm.model.supercontig_4.2230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein