PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_4.181

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 218aa MW: 24565.9 Da PI: 7.3387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_4.181	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	40	91	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ h Er RR+++ + ++ Lr+llP ++ ++ Av+YIk+L evm.model.supercontig_4.181 40 KKMLHRDLERLRRQEMATLYASLRTLLPLeY---IKGYRAVSDHMNGAVNYIKDL 91 6788***********************55...66668889*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.839	39	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-7	39	96	No hit	No description
SuperFamily	SSF47459	9.68E-11	39	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-6	40	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-8	41	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDSGGGGFDN NPMMRKSQLK QKSSVNDSSG ENYDNDDYKK KMLHRDLERL RRQEMATLYA 60 SLRTLLPLEY IKGYRAVSDH MNGAVNYIKD LKQRVEGLRA TRDELKKLSE SSVGFDSEIN 120 SSSSYFSPSC VMVNPCPCGV EVVISTHLRV QGLPLSRALQ VILDQGLNVV SCVSTRLNET 180 LVYKMQVEVN ELTGFDTCWL QQKLIAEEVR LWNETSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_4.181

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908866.1	1e-155	transcription factor bHLH120-like
Swissprot	Q9FLI0	9e-53	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A0D2S5Z0	1e-59	A0A0D2S5Z0_GOSRA; Uncharacterized protein
STRING	evm.model.supercontig_4.181	1e-161	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67
Representative plant	OGRP1638	8	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_4.181

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]