PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_39.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 318aa    MW: 36349.6 Da    PI: 7.4041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_39.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42e-1285111127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C+f+++tG Ck+G+ C+F+H++
  evm.model.supercontig_39.3  85 PGQPECQFYMKTGDCKFGAVCRFHHPR 111
                                 5789*********************96 PP
2zf-CCCH40.35.4e-13132157227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++lC f++r+G+Ck+G++CkF H++
  evm.model.supercontig_39.3 132 GEPLCIFYSRYGICKFGPSCKFDHPM 157
                                 789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.59684112IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-986111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-688114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-590112IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389130158IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10132157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4135155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTVEEAYQIN REKVERTINA TRNLNDWEIS KYDDLLRILD SLQVKAAADQ AVWKLEKKEV  60
FTLRSYYRFL NARDDHRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERLIPAPDC  120
VLSPIGLPLR QGEPLCIFYS RYGICKFGPS CKFDHPMGVF TYNFSASTSN DTPVRRLLGS  180
SSGTALNLSS EGLVEAGSTK PRRLSLSETR QMPSGDDNID TDLLNEEFLF QLHDHRIIGN  240
SNLLSLFCHA EKHGPNIGMS RKNWAFQNQR LQIREIIVMD ALQQLLIICA KYLEELIAVS  300
LICMYNGFLP KSWLCNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_39.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164701e-45AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SWF98e-84ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
STRINGevm.model.supercontig_39.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-59zinc finger protein 1