PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_376.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25329.2 Da PI: 9.2402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.5 | 3.2e-18 | 39 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G+++W++I+r++ gR++k+c++rw + evm.model.supercontig_376.4 39 KGPWSAEEDRILTRLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 84 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.6e-17 | 93 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ evm.model.supercontig_376.4 93 PFSPAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 135 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.589 | 34 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-31 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 39 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-14 | 41 | 83 | No hit | No description |
SMART | SM00717 | 3.8E-15 | 90 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.332 | 90 | 140 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-14 | 93 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 93 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-11 | 93 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEPINYTCFP STSSSDSSSS DSSFSSKSPR DPTNSDRIKG PWSAEEDRIL TRLVDRYGPR 60 NWSLISRYIK GRSGKSCRLR WCNQLSPNVQ HRPFSPAEDE TILAAHARYG NRWATIARLL 120 PGRTDNAVKN HWNSTLKRRA RELLPQQRQQ VMTGGSMEEE ELTALTLAPP GRRGCGGGLV 180 VEEEEERRRE NFPAGFWDAL RDVIAREVRD YVTSSLTDFS KSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-41 | 38 | 140 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-41 | 34 | 140 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-41 | 34 | 140 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-41 | 38 | 140 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-41 | 38 | 140 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_376.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910959.1 | 1e-165 | transcription factor MYB117-like | ||||
TrEMBL | A0A2C9VYF4 | 5e-92 | A0A2C9VYF4_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_376.4 | 1e-164 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14553 | 11 | 22 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-58 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_376.4 |