PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_35.12

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB_related

Protein Properties

Length: 319aa MW: 34670.8 Da PI: 9.4533

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_35.12	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.9e-14	100	144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky evm.model.supercontig_35.12 100 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 144 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.931	93	149	IPR017930	Myb domain
SuperFamily	SSF46689	5.23E-17	95	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-17	96	147	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-9	97	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-11	100	144	IPR009057	Homeodomain-like
CDD	cd00167	1.94E-9	100	145	No hit	No description
Pfam	PF00249	3.4E-11	100	144	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAGTCATTAD GTTPSLETSG GGEIMLFGVR VLVDSMRKSV SMNNLSQYEQ PQELLKNNGS 60 NNNSNSSDVT KEDATPGYAS ADDAVPNSSG GNRERKRGIP WTEEEHKLFL LGLQKVGKGD 120 WRGISRNFVK TRTPTQVASH AQKYFLRRSN LNRRRRRSSL FDITTETVAA TPMEEEQSHY 180 QNSSSQTHSV PSPAQPETNN VGGFHLMPAF PMTINAAALP IPIENPMENL TLGQVNRAAN 240 NRSTKLIRPI PVAPRASMIS DLSLNLKLSA GEVDPLPLSL NLSLLSNERE SLTTTRHSAF 300 QVMSSFNRGD SNSIISVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_35.12

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900894.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	8e-72	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2N9EII5	1e-120	A0A2N9EII5_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_35.12	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69
Representative plant	OGRP394	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-59	MYB_related family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_35.12

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]