PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_3486.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 6972.94 Da PI: 10.8148

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_3486.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.2	1.4e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKK +ELSvLCdae+a+iifss+gkl+e+ evm.model.supercontig_3486.1 9 ERIENKINRQVTFSKRRNGLLKKGYELSVLCDAEIALIIFSSRGKLFEFG 58 69**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.8E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.23	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-28	2	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.81E-35	2	59	No hit	No description
PRINTS	PR00404	1.3E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGKVVLER IENKINRQVT FSKRRNGLLK KGYELSVLCD AEIALIIFSS RGKLFEFGSH 60 X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-21	1	59	1	59	MEF2C
5f28_B	2e-21	1	59	1	59	MEF2C
5f28_C	2e-21	1	59	1	59	MEF2C
5f28_D	2e-21	1	59	1	59	MEF2C
6byy_A	2e-21	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-21	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-21	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-21	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-21	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-21	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-21	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-21	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_3486.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007038532.2	6e-32	PREDICTED: MADS-box transcription factor 6 isoform X2
Refseq	XP_017973049.1	5e-32	PREDICTED: MADS-box transcription factor 6 isoform X1
Refseq	XP_017973050.1	4e-32	PREDICTED: MADS-box transcription factor 6 isoform X3
Refseq	XP_022737294.1	9e-33	MADS-box transcription factor 6-like
Swissprot	P29386	8e-31	AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBL	A0A0D2SS44	5e-31	A0A0D2SS44_GOSRA; Uncharacterized protein
TrEMBL	A0A2N9FVP9	2e-31	A0A2N9FVP9_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_3486.1	2e-35	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-33	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_3486.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dreni L,Zhang D Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes. J. Exp. Bot., 2016. 67(6): p. 1625-38 [PMID:26956504]