PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_34.41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22414.1 Da PI: 9.9233 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.6 | 2.2e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r+v + kR +g++KK +ELS+LCd+e++ ii+++ evm.model.supercontig_34.41 11 IVNDKARKVAYKKRCKGLIKKVNELSILCDVEACAIIYGE 50 77999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-17 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.586 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.40E-24 | 3 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-22 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MVRKSVKIAY IVNDKARKVA YKKRCKGLIK KVNELSILCD VEACAIIYGE YSSQPEVWPS 60 SSKAQDVITR FQMMPESEQK KKILNQESYL IERLHKITEK LDKQVKRNRE EELTQIMLKS 120 LSIRCIKDLE LKDLDDLGWI INRNMKEIEW RKNKLKSVDN NSKLAQETPK SSAEATPPVQ 180 VTALAANPSI HEKN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_34.41 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021900917.1 | 1e-139 | agamous-like MADS-box protein AGL80 | ||||
STRING | evm.model.supercontig_34.41 | 1e-139 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-35 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_34.41 |