PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_34.30
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 544aa    MW: 61586.5 Da    PI: 6.098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_34.30genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.32.5e-1061665371374
                         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....ssee 77 
                                  lv+lLl+cAeav  +d++la+++La++   a+  gd++qR+  +f+ +L++rl+   +++ +  + ++   ++     ++e+
  evm.model.supercontig_34.30 166 LVHLLLACAEAVGCRDTKLADSILAQIWSSATLMGDSLQRVSYCFAMGLKSRLSL-LQTVTANGTFTNGG-NHvcwvtMEEK 245
                                  68***************************************************98.33333333333332.334677799** PP

                         GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeel 158
                                  + a++l+++++P++ f++++aN+aI +a++g+  +HiiD+++++ lQWp+L++ LasRpegpp +l+iT++ + +   + el
  evm.model.supercontig_34.30 246 MEAFHLLYQTTPFIAFGFMAANEAICQATQGKYSLHIIDLGMEHTLQWPSLIRNLASRPEGPPkKLKITAIINDQ--YRIEL 325
                                  ***********************************************************988889********55..99*** PP

                         GRAS 159 eetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                  e   + L + A++lg+p+e+ ++ +  + + ++ e+L +++gEal Vn++++lh+ ++es  + +   ++L+++k+lsP+++
  evm.model.supercontig_34.30 326 EGSTKLLVEEANSLGIPLEIYMISEPaTPTLMTREKLGLEEGEALLVNSIMHLHKYVKESRGSLK---AILQAIKKLSPTLL 404
                                  **********************844436677799***********************88776666...9************* PP

                         GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                  +vveq+a+hn++ Fl rfle+l+yysa+fdslea+l r+s +r+k+E+  +++ei+n+va eg +r+erhe++ +Wr++l++
  evm.model.supercontig_34.30 405 TVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLLRNSPQRMKIEKYHFAEEIRNIVAYEGLDRVERHERADQWRRQLGR 486
                                  ********************************************************************************** PP

                         GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  aG++ + l+    +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  evm.model.supercontig_34.30 487 AGYQVMGLK--CLSQARMMLSVYGCDGYTLSCEKGCLLLGWKGRPIMLASAWQ 537
                                  *****9985..89***************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.009140519IPR005202Transcription factor GRAS
PfamPF035148.8E-104166537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNSWDSFSKH ETLNHELAIR RFCPARLEQE QGVSDQWSID TVNDSVFSLP HDQYHHDHNY  60
IHQNVTTHGL PASDVNEFVD SFINMDHHDG QYDDHDHQND DDGNKSLQVK TQYLLDHHHD  120
DHLHQQNWSG ESDYNRYFPM MMPGGDHEVD LYGSSVSHGV DQGLYLVHLL LACAEAVGCR  180
DTKLADSILA QIWSSATLMG DSLQRVSYCF AMGLKSRLSL LQTVTANGTF TNGGNHVCWV  240
TMEEKMEAFH LLYQTTPFIA FGFMAANEAI CQATQGKYSL HIIDLGMEHT LQWPSLIRNL  300
ASRPEGPPKK LKITAIINDQ YRIELEGSTK LLVEEANSLG IPLEIYMISE PATPTLMTRE  360
KLGLEEGEAL LVNSIMHLHK YVKESRGSLK AILQAIKKLS PTLLTVVEQD ANHNGPFFLG  420
RFLESLHYYS AIFDSLEASL LRNSPQRMKI EKYHFAEEIR NIVAYEGLDR VERHERADQW  480
RRQLGRAGYQ VMGLKCLSQA RMMLSVYGCD GYTLSCEKGC LLLGWKGRPI MLASAWQANN  540
SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5417353625377Protein SCARECROW
5b3h_D1e-5417353625377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_34.30
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052611e-40KM405261.1 Jatropha curcas GRAS34 protein (GRAS34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021900915.10.0DELLA protein RGL1-like
TrEMBLA0A2P6Q8A00.0A0A2P6Q8A0_ROSCH; Putative transcription factor GRAS family
STRINGevm.model.supercontig_34.300.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-72RGA-like 1