PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_33.206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 26611.8 Da PI: 4.2116 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.1 | 1.2e-21 | 18 | 138 | 5 | 127 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 +rF+P+d++l+ ++L++k+ g +l+ + i++ i k+ +P++L kv ++ e yfF+++ a ++r+ + +gyW evm.model.supercontig_33.206 18 CRFDPNDHQLIINFLNRKAMGLPLPQ-NKIQTDAIDKWtNPQELADKVPLgRDLERYFFARTGILVADDRRNDVVGGRGYW 97 79*********************999.6688888877559****965555155599********9999888888999**** PP NAM 84 katgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 k + ++e++ k+e++g k+ L+++ + +g+kt+W+m ey+ evm.model.supercontig_33.206 98 KPMSEiTEEIVF-KDEKIGEKRELIYF---EADGSKTQWIMYEYT 138 *88775788888.8999**********...678999********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.171 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-13 | 18 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-23 | 18 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDFGPEDLAS AMSLLSFCRF DPNDHQLIIN FLNRKAMGLP LPQNKIQTDA IDKWTNPQEL 60 ADKVPLGRDL ERYFFARTGI LVADDRRNDV VGGRGYWKPM SEITEEIVFK DEKIGEKREL 120 IYFEADGSKT QWIMYEYTAF LTIESPSSSP EAEIWVLYKL RNKGDVDEYD NVVSGTTGEA 180 AAAAALCVLN ELADDEEEYE PPPASTDTSE DGPDSKRRKG NTSGVVVADT LIVIMRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_33.206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021901177.1 | 1e-176 | NAC domain-containing protein 83-like | ||||
STRING | evm.model.supercontig_33.206 | 1e-175 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 2e-14 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_33.206 |