PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_3.98 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 247aa MW: 28401.5 Da PI: 8.6555 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.8 | 2.9e-25 | 136 | 185 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +e++l++++k+F+ pi+ AAke++v+lTvLK++CR+++I RWPhRkiksl evm.model.supercontig_3.98 136 SELELKEIQKHFDSPITMAAKEMKVGLTVLKKRCRELNITRWPHRKIKSL 185 789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.779 | 120 | 207 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-21 | 138 | 185 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MENSAVNGDL VPKMEGDPLY QFDWVFFEES FEKIMELPPL PSLLELTSTD SYTEPLRKQE 60 STELTEIKGF DDEVNLYEDF TAGVKPLNVA GGSSSTELTE SDTRSLVHDR VRRGSSEDQK 120 EDGEERRMKR RRKKSSELEL KEIQKHFDSP ITMAAKEMKV GLTVLKKRCR ELNITRWPHR 180 KIKSLKSLIE NVRELGMDGE IAVLKEHKRL LEAVPDMELS QRTKKLRQVC FKANYKRRRA 240 LAKAAA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 133 | RRMKRRRKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_3.98 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909328.1 | 0.0 | protein RKD4 | ||||
TrEMBL | A0A2N9IVW1 | 1e-64 | A0A2N9IVW1_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_3.98 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53040.1 | 5e-35 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_3.98 |