PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_3.503

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 283aa MW: 31099.9 Da PI: 6.7891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_3.503	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a++L + ++Y++sLq evm.model.supercontig_3.503 174 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAMMLDEIINYVQSLQ 221 8***********************9....356999************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-16	168	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.28E-10	168	225	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.2E-16	170	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.072	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-6	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-8	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAGFSADLQS FRSSSFPFME TDNPNVESVN QFAGLNPSST AIADASNLVN FQSFLPFSAE 60 ALFGNQAPDF PPTFPENFLG IFQDSNQNAV MPIVSQPCVA PRITFNNHET KKRKSMEVVS 120 ESSSGISAPS PPVSDSGSKR KQSSGRGKRV KSNEDEKSKE VVHVRARRGQ ATDSHSLAER 180 VRRGKINERL RCLQDIVPGC YKTMGMAMML DEIINYVQSL QNQVEFLSMK LTAASTFYDF 240 NSESDAIETM QRAKAEESRE IVRLMKEGGF NGVGNLSSSW PL*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_3.503

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909358.1	0.0	transcription factor BEE 3
Swissprot	Q8GWK7	4e-70	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A2K1Y9C0	1e-112	A0A2K1Y9C0_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_3.503	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-64	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_3.503

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]