PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.402
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 374aa    MW: 42101 Da    PI: 7.4145
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.402genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2185144357
                                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                  +R+++t+eql++Leel+++ +r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  evm.model.supercontig_3.402  85 SRWNPTPEQLRTLEELYRRgTRTPTADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 144
                                  7*****************99**************************************97 PP
2Wus_type_Homeobox115.72.2e-3784146365
            Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                  ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  evm.model.supercontig_3.402  84 SSRWNPTPEQLRTLEELYRRGTRTPTADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 146
                                  79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.4E-582149IPR001356Homeobox domain
PfamPF000463.3E-1985144IPR001356Homeobox domain
SuperFamilySSF466893.42E-1285151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-985144IPR009057Homeodomain-like
CDDcd000861.60E-686146No hitNo description
PROSITE profilePS5007110.99790145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MWTMGYNDGC EFNMSAAADS FNGRKLRPLM PRPLTCTNNN NPTANPPCLN RIHGTDFFTL  60
NHHLATMADL NKRDFNAQPA VVVSSRWNPT PEQLRTLEEL YRRGTRTPTA DQIQHITAQL  120
RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ESSTPDNEHN AHDFEIFERK DSGASRTSYE  180
VEQTKNWAPS TNCSTLAEES DSMLRRPAKS AVAAECRPEG WAPFMERNSA WQMMQLSSPL  240
PPPPPPPTHI ISTTAVPTSA AAVISTAAHR IPTSIVAEPT TATSRMKLKF TKTTTDHDHH  300
HLNIFIANGV NQLNSLAASH YEENGECGES QTLQLFPLRS GNENDNEKEM SEGSVGEAMN  360
GPYQFFEFLP LKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909296.10.0WUSCHEL-related homeobox 1 isoform X2
TrEMBLA0A1Q3CUD01e-133A0A1Q3CUD0_CEPFO; Homeobox domain-containing protein
STRINGevm.model.supercontig_3.4020.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.17e-62WUSCHEL related homeobox 1