PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.342
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 386aa    MW: 42426.5 Da    PI: 8.981
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.342genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.3e-32243296255
                      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  evm.model.supercontig_3.342 243 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 296
                                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15240297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28241297IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23243296IPR006447Myb domain, plants
PfamPF002492.1E-7244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSGKGVFSTD IQQPSLNPIP DLSLHISPPN SAPSSICTGP NDLDIWRKED DSSGLKSHSD  60
SSIKADTELS LANPTTFEAE SPWRRRDQAT RPNTGGFNFG GCSSSESMSR INHGISWLDV  120
SGLKPIKGIP VYNNCGFPLS SASSDHGENM DRRFSSYQTA SYASSSSSSV LSSSTNYASK  180
SPLPSYYNRM GRSPKFNGLP METVRSQYEY YGGGFGGAEM CSNGMIRSRF IPKLQSKRNM  240
RAPRMRWTTS LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKST  300
DKAAPSSDGS GDEDFLASST RSLQQINNIN SNSLLNQRET LNSPAEHHNP CASPNLWSNS  360
SRYVELVKLQ PKFVLFMELK KCFCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-17244298357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17244298357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17244298357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17244298357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17244298458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_3.342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909389.10.0transcription repressor KAN1-like isoform X2
TrEMBLA0A061FX921e-125A0A061FX92_THECC; Homeodomain-like superfamily protein, putative isoform 4 (Fragment)
STRINGevm.model.supercontig_3.3420.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66062645
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-53G2-like family protein