PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2742.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 113aa    MW: 13242.1 Da    PI: 11.0085
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2742.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-18956148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l ++++++G g W++++   g++R++k+c++rw++yl
  evm.model.supercontig_2742.1  9 KGAWTAEEDDRLRKCIEKHGEGKWHRVPLAAGLNRCRKSCRLRWLNYL 56
                                  79*********************************************7 PP
2Myb_DNA-binding52.11.5e-1662107148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T++E +l ++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.supercontig_2742.1  62 RGKFTADEVDLMIRMHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 107
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.183160IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-22659IPR009057Homeodomain-like
SuperFamilySSF466897.49E-306103IPR009057Homeodomain-like
SMARTSM007171.2E-14858IPR001005SANT/Myb domain
PfamPF002497.6E-17956IPR001005SANT/Myb domain
CDDcd001675.20E-101156No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2460110IPR009057Homeodomain-like
PROSITE profilePS5129419.45261111IPR017930Myb domain
SMARTSM007179.5E-1561109IPR001005SANT/Myb domain
PfamPF002498.9E-1562107IPR001005SANT/Myb domain
CDDcd001674.61E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MEATLGLRKG AWTAEEDDRL RKCIEKHGEG KWHRVPLAAG LNRCRKSCRL RWLNYLKPNI  60
NRGKFTADEV DLMIRMHKLL GNRWSLIAGR LPGRTANDVK NYWNTHLRKK DSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2371102104MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-23711025127MYB TRANSFORMING PROTEIN
1mse_C1e-2371102104C-Myb DNA-Binding Domain
1msf_C1e-2371102104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2742.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887273.18e-78transcription factor MYB113-like
SwissprotQ9FNV92e-60MY113_ARATH; Transcription factor MYB113
TrEMBLB6V7D24e-64B6V7D2_VITVI; R2R3 MYB transcription factor
STRINGevm.model.supercontig_2742.16e-77(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]