PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_27.186

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 392aa MW: 42784.3 Da PI: 6.3388

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_27.186	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.6	4.9e-12	46	70	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt +LH+rFv+av+qLGG++ evm.model.supercontig_27.186 46 KPRLRWTADLHDRFVDAVTQLGGPN 70 79*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-10	43	70	IPR009057	Homeodomain-like
Pfam	PF14379	4.2E-16	213	258	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MYGRVIGSHE SGIVGHEEMV GGPVGHTHAH RPPSGDPCLV LTSDPKPRLR WTADLHDRFV 60 DAVTQLGGPN ICLTCMHGNL PSIPPWEKEV SFPVCVNRMN FSLKKCGESL LYESEFYYML 120 MRMCNNCRSN TKGNHADNEC EGTNTLPLEE SPPGFCSLLK FLLSQKYRLG KQSGKDMGEA 180 PKDGMSASYL LESPGISNSS PNLPSSDVHE GYEVKEALRV QMEVQSKLHL QVEAEKHLQI 240 RQDAERRYLT MLERACKMLA DQFLGGALSD SENQKCVGVA GKMARNCSLD PLGFYSSHST 300 EVGNANGQEE EVPAGIHQQR TDCSTESCLT SHESPRGLTM EGPLVGGNKR IMNLDTTTGS 360 LIWSGTKMRS QEVNVAAQSP QGTAGCGIHQ N*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MYGRVIGSHE SGIVGHEEMV GGPVGHTHAH RPPSGDPCLV LTSDPKPRLR WTADLHDRFV  60
DAVTQLGGPN ICLTCMHGNL PSIPPWEKEV SFPVCVNRMN FSLKKCGESL LYESEFYYML  120
MRMCNNCRSN TKGNHADNEC EGTNTLPLEE SPPGFCSLLK FLLSQKYRLG KQSGKDMGEA  180
PKDGMSASYL LESPGISNSS PNLPSSDVHE GYEVKEALRV QMEVQSKLHL QVEAEKHLQI  240
RQDAERRYLT MLERACKMLA DQFLGGALSD SENQKCVGVA GKMARNCSLD PLGFYSSHST  300
EVGNANGQEE EVPAGIHQQR TDCSTESCLT SHESPRGLTM EGPLVGGNKR IMNLDTTTGS  360
LIWSGTKMRS QEVNVAAQSP QGTAGCGIHQ N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_27.186

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021902131.1	1e-153	protein PHR1-LIKE 2-like isoform X1
TrEMBL	W9R250	1e-112	W9R250_9ROSA; Myb family transcription factor APL
STRING	evm.model.supercontig_27.186	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17085	9	11
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.2	1e-19	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_27.186