PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_26.135
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 483aa    MW: 54759.4 Da    PI: 4.4716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_26.135genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.8e-53171432128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratks 80 
                                   ppGfrFhPtdeelv +yLk+k+ +k+l+l ++i e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat++
  evm.model.supercontig_26.135  17 PPGFRFHPTDEELVLYYLKRKICKKRLKL-DIIGETDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGGRSNRATRN 96 
                                   8****************************.99**************96446788999************************ PP

                           NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   gyWkatgkd++v++ +++  g+kktLvfy+grap+g +tdWvmhey++
  evm.model.supercontig_26.135  97 GYWKATGKDRNVMC-NSRSAGVKKTLVFYRGRAPNGARTDWVMHEYTM 143
                                   **************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5512154IPR003441NAC domain
PROSITE profilePS5100552.54516167IPR003441NAC domain
PfamPF023657.5E-2817142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MKVTSDSGFV DDKDQWPPGF RFHPTDEELV LYYLKRKICK KRLKLDIIGE TDVYKWDPEE  60
LPGQSILKTG DRQWFFFSPR DRKYPNGGRS NRATRNGYWK ATGKDRNVMC NSRSAGVKKT  120
LVFYRGRAPN GARTDWVMHE YTMDEEELKR CQNVKKEDWA EDECVHESIP AESKALTKQA  180
KEIAPVDSIG VNSHVNSSAE DDIEEFMRRM ADGPAFSQPQ IFNYSYALPQ IDEEDAQSTL  240
VHPSSRGVIL PEPVNTFAPS SQQYDMHVNF DFTQSATSKL QSNEVPEVTS ATKTCKPAPQ  300
ICEEEDFLEI DDLLGPEPTF SSAEQPSMDN FLDGLSELDL YHDAAMFLQD MAPIDQETIS  360
HSYINNSDNN LASQLGQQVD CEFQSQSVIN PLGHQGQWHA VDQVDYHFQA HSVGNQVDHQ  420
VQSHPVTNQV DFQFQPQFAV DQLDYQMQPN LFGDLWIDEQ NTRIFTQAES GHGTFSLPAS  480
GT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-491714316140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13443KRKICKKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_26.135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902468.10.0LOW QUALITY PROTEIN: NAC domain-containing protein 17-like
TrEMBLA0A1Q3BW291e-156A0A1Q3BW29_CEPFO; NAM domain-containing protein
STRINGevm.model.supercontig_26.1350.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Representative plantOGRP9932711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.19e-77NAC domain containing protein 17