PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2586.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 329aa    MW: 37180.5 Da    PI: 7.1251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2586.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.62.6e-32571981128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkr 73 
                                   lp+G++F+Ptd+e++ e+L++kv ++       ++++  ++k   +i++++P +Lp  v+++ +  +fF++ +k+y+tg+r
  evm.model.supercontig_2586.1  57 LPAGVKFDPTDQEIL-EHLEAKVLSDVrklhplIDEFIpTLKGEnGICYTHPGRLP-GVSKDGQIRHFFHRPSKAYTTGTR 135
                                   799***********9.99****999885664442222222444447**********.555666777*************** PP

                           NAM  74 knratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   k+r+++       + +W++tgk+++vl+ +g  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  evm.model.supercontig_2586.1 136 KRRKVHnneedgsETRWHKTGKTRPVLV-DGVIKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 198
                                   ***7444455444788************.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-3753217IPR003441NAC domain
PROSITE profilePS5100533.42457217IPR003441NAC domain
PfamPF023652.8E-1558198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTWCNNTDDE DDDHDHDPPI SSNSKIQQQI RTISCPSCGF IIHYQDDQGG ISDLPGLPAG  60
VKFDPTDQEI LEHLEAKVLS DVRKLHPLID EFIPTLKGEN GICYTHPGRL PGVSKDGQIR  120
HFFHRPSKAY TTGTRKRRKV HNNEEDGSET RWHKTGKTRP VLVDGVIKGF KKILVLYTNY  180
GRQRKPEKTN WVMHQYHLGN NEEEKDGELV LSKVFYQTQP RHCGSSSTTS VIKDLVINNF  240
ESGSVKRRIL TTELLHVQDD RNITTSATLV DFYNNPPPFI AYDHGSCHRN TESSPHDLIP  300
NLVVQGDNGS SFINPFSSDT SKARLQRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887723.10.0NAC domain-containing protein 10
SwissprotF4HY611e-114NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A286KIS90.0A0A286KIS9_CARPA; NAC6 protein
STRINGevm.model.supercontig_2586.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-115NAC domain containing protein 10