PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 101aa MW: 11619.1 Da PI: 7.1437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.3 | 1.9e-12 | 15 | 92 | 1 | 64 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpk......kvkaeekewyfFskr 64 +ppG+rF P++e+l+++yL+ k +++ + + ike+++y++eP +Lp +ka++++w+ ++ r evm.model.supercontig_21.173 15 MPPGCRFYPSEEQLLCCYLTGKNRNTIgdedgcegSNGYDLIKELNLYDYEPYELPDsacfsyGCKARKRHWFCYTIR 92 79******************999887755566555444458**************94477766555677788888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-12 | 11 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.861 | 15 | 100 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-5 | 16 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MEHSRCMRES TSFKMPPGCR FYPSEEQLLC CYLTGKNRNT IGDEDGCEGS NGYDLIKELN 60 LYDYEPYELP DSACFSYGCK ARKRHWFCYT IRVLKGSSAR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.173 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903462.1 | 3e-70 | LOW QUALITY PROTEIN: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A314Z5D2 | 1e-33 | A0A314Z5D2_PRUYE; NAC domain-containing protein 104-like isoform X1 | ||||
TrEMBL | A0A314ZAX4 | 3e-33 | A0A314ZAX4_PRUYE; NAC domain-containing protein 104-like isoform X1 | ||||
STRING | evm.model.supercontig_21.173 | 1e-69 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17192 | 8 | 10 | Representative plant | OGRP11504 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 3e-11 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.173 |