PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WOX | ||||||||
Protein Properties | Length: 223aa MW: 25412.9 Da PI: 10.2608 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.5e-21 | 84 | 143 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++ +l +++ ++V++WFqN++a+e++ evm.model.supercontig_21.170 84 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARERQ 143 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.3 | 7.2e-38 | 84 | 145 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaRerqkq evm.model.supercontig_21.170 84 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQ 145 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-13 | 77 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.993 | 79 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-7 | 81 | 148 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-19 | 84 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.65E-4 | 84 | 145 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-8 | 85 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MKVHQLARGL ITTWDHEPSL TLGCKRLRPL APKLAATTSD SAAAVSAAFD LKSFIRPESG 60 PRKLGSSDDH KKDSPPVETH PGGTRWNPTQ EQIGILEMLY RGGMRTPNAQ QIEQITVQLG 120 KYGKIEGKNV FYWFQNHKAR ERQKQKRNSL GITHSPRTPP TIIANIVSFN PRREMVEREE 180 DSAYKRKCRS WGFQSLELEE TRRCKEEENR TLELFPLHPE GR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.170 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903560.1 | 1e-166 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 2e-83 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A061FCE5 | 1e-117 | A0A061FCE5_THECC; WUSCHEL related homeobox 4 | ||||
STRING | evm.model.supercontig_21.170 | 1e-166 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5980 | 27 | 47 | Representative plant | OGRP7167 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 2e-78 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.170 |