PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_200.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 18721.4 Da PI: 7.7412 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.2 | 1.4e-18 | 7 | 117 | 3 | 116 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 G++F P+deel+ + L+ k++g + +++ke+d+y+ ePw k e++ y F++ +kk+++ +r r++ sg+ evm.model.supercontig_200.10 7 IGYHFTPSDEELL-QILAIKLRGGYeILGGHAMKEIDVYQKEPWLVFD--KDESEPFYVFTSLKKKSSSRSRMDRKVGSGT 84 69***********.779999988874444467************9952..33455779*********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkg 116 W+ + +v+++++++vg kk+L+f +++++k evm.model.supercontig_200.10 85 WRMERS-IDVVDQGDKVVGYKKMLTFEEEKKKKK 117 **8766.777777*************97766653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.21 | 5 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-19 | 6 | 117 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-9 | 7 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEGAWNIGYH FTPSDEELLQ ILAIKLRGGY EILGGHAMKE IDVYQKEPWL VFDKDESEPF 60 YVFTSLKKKS SSRSRMDRKV GSGTWRMERS IDVVDQGDKV VGYKKMLTFE EEKKKKKNIE 120 NVLPSNGVSG HKLQEITLAL ELQGSLPYRK EDYIGGIRDL FNA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_200.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887288.1 | 1e-117 | NAC domain-containing protein 19-like | ||||
STRING | evm.model.supercontig_200.10 | 1e-116 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5881 | 2 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 2e-07 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_200.10 |