PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.95
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 319aa    MW: 36063.7 Da    PI: 8.6259
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.95genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.11.3e-1939113272
                    trihelix   2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                                 Wt qe+l+Li+a+r ++er  +    +k  + +W++v ++++++g++rs++qC++kw+nl ++ykki++   +  
  evm.model.supercontig_2.95  39 WTIQETLTLITAKRLDDERRTKptpiSKPGELRWKWVENYCWAHGCHRSQNQCNDKWDNLLRDYKKIRHYHDSSP 113
                                 **************8888888645557899**************************************9988853 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.4223199IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-535100IPR009057Homeodomain-like
PfamPF138374.6E-1538123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSDPPPPPPP LPPPITFHEQ QPPPPTHQPT TRDYRKGNWT IQETLTLITA KRLDDERRTK  60
PTPISKPGEL RWKWVENYCW AHGCHRSQNQ CNDKWDNLLR DYKKIRHYHD SSPPHLPSYW  120
SLERHHRKLH NLPTNMSLEV FQALHDVVQR KHHILPKPPP PPPPPPPLPP PPPLALPPAP  180
PPPPPQHTAA SQQPPDETIP PPPDVAAPRD DEASVEVSDS SETESSGNDP NNETKRRKVG  240
KIGASIVRSA SVLAKTLKSC EEKKEKRHQQ VMELEQRRLQ IEESRNEMNR QGIANLVSAM  300
SNLSGAIHSL ISTHYDQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.95
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909931.10.0WASH complex subunit 3-like isoform X1
TrEMBLA0A061EA141e-116A0A061EA14_THECC; Transcription factor, putative
STRINGevm.model.supercontig_2.950.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-43Trihelix family protein