PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_2.82

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 301aa MW: 33540.6 Da PI: 8.1364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_2.82	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.4e-33	20	73	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ evm.model.supercontig_2.82 20 PRLRWTPELHHCFVHAIDRLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	16	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.441	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	5.55E-16	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	20	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGSCGRSSGA VRQYVRSKVP RLRWTPELHH CFVHAIDRLG GQDKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMRSDLGR PGRSSTHQRR QSFEEHDGCV DEVNDMGFPP SSKPIQESDS 120 LFTYSTNTLP SKRGRIESRS SISDQNLQCS QGICEAVSNP YSFDDYLQNV GEPKRIKEGS 180 SRREQLHACP FSLPHDLHNL TSFTCKMDDS DCLKVSKLYE EQKRSREETY CKSKKPKRHH 240 QEEGGGCELS LSLSLHCPWS QRSIASATSE ISEAISSCSG SSSAEQRSIN LDLSIALCGS 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	21	75	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_2.82

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909669.1	0.0	putative Myb family transcription factor At1g14600
Refseq	XP_021909670.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	A0A0B0NL62	1e-122	A0A0B0NL62_GOSAR; Uncharacterized protein
TrEMBL	A0A1U8KMR9	1e-122	A0A1U8KMR9_GOSHI; putative Myb family transcription factor At1g14600
STRING	evm.model.supercontig_2.82	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_2.82