PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.277
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 264aa    MW: 29214.6 Da    PI: 5.8415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.277genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20117166255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  +++GVr+++ +g+W+AeIrdp +   rkr++lg+f taeeAa+ +++a++k++g
  evm.model.supercontig_2.277 117 KFRGVRQRP-WGKWAAEIRDPAQ---RKRIWLGTFNTAEEAAAVYDEAALKFKG 166
                                  89*******.**********943...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381236.1E-672262IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.76E-34116175No hitNo description
SMARTSM003801.1E-40117180IPR001471AP2/ERF domain
PfamPF008476.3E-13117166IPR001471AP2/ERF domain
PROSITE profilePS5103224.276117174IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22117174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-31117175IPR001471AP2/ERF domain
PRINTSPR003671.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003671.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVSIQSTLKL SSRVFTTNKL LHDPPADAKV RRRRVQIILT DADATDSSSE DEEERHGFLR  60
RVKRQVQVIT FDSSSTPDPH PPRSPTPLPA PTTLPKQKSP RRRPSRVTKS DVSRGQKFRG  120
VRQRPWGKWA AEIRDPAQRK RIWLGTFNTA EEAAAVYDEA ALKFKGSDAV TNFPNPSVTE  180
LTAVDSQKDG FDSSSTATSS PTSVLRYEEI TPFDGLNYCD VDTFGFGIDA ALSVPDFMFS  240
GKSFAEEEFG ELDVDDFLVD AVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21113174163ATERF1
3gcc_A2e-21113174163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4537020.0KM453702.1 Carica papaya AP2/ERF transcription factor ERF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909959.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0K0NKZ30.0A0A0K0NKZ3_CARPA; AP2/ERF transcription factor ERF5
STRINGevm.model.supercontig_2.2770.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2394944
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-21cytokinin response factor 1