PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_190.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WOX
Protein Properties Length: 284aa    MW: 31001.2 Da    PI: 6.3649
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_190.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-202281357
                                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 +R+++tkeq++ Le+l+ +  r+psae++++++ +l    +++ ++V++WFqN++a++++
  evm.model.supercontig_190.1 22 SRWNPTKEQINMLESLYTQgIRTPSAEQIQQITGRLrafgHIEGKNVFYWFQNHKARQRQ 81
                                 7*****************99**************************************96 PP
2Wus_type_Homeobox113.61e-362183365
            Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                 ++RW+Pt+eQi++Le+ly++G+rtP++e+iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq
  evm.model.supercontig_190.1 21 TSRWNPTKEQINMLESLYTQGIRTPSAEQIQQITGRLRAFGHIEGKNVFYWFQNHKARQRQKQ 83
                                 79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8841782IPR001356Homeobox domain
SuperFamilySSF466891.15E-121789IPR009057Homeodomain-like
SMARTSM003896.6E-51986IPR001356Homeobox domain
PfamPF000464.5E-182281IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-82281IPR009057Homeodomain-like
CDDcd000866.31E-62383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGDNMEVCG TGGGGGGTGS TSRWNPTKEQ INMLESLYTQ GIRTPSAEQI QQITGRLRAF  60
GHIEGKNVFY WFQNHKARQR QKQKQESVAY FSRFLQKTAH SLYPTSSPNV ICRPYCLPHS  120
HDLGLCPNQC PKLLPGGFSM RSSSISDHQK PETPPTSELR GHDFPHQDLN LLLPTHESYN  180
GLPDAIFNSN EHQINDKETL ALFPLQPSGI LQAKSTSGLT WLASAETSNC TPSSSSSETG  240
NGGGVVVDDP DHHGGGGERP FFDFFSAGST DQVCWESRSS MLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887610.10.0WUSCHEL-related homeobox 2
TrEMBLA0A061GX691e-73A0A061GX69_THECC; WUSCHEL related homeobox 2, putative
STRINGevm.model.supercontig_190.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.16e-49WUSCHEL related homeobox 2