PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_184.27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39790.7 Da PI: 8.5484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky evm.model.supercontig_184.27 64 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 108 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.658 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-11 | 63 | 111 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-15 | 63 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-18 | 63 | 111 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 64 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-11 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.46E-8 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MVSLNPNPAQ GFYFFDPMNF GLPGLNPPPP PAAPPSTLPP FLLLRLRLPP PPQLPCLFLT 60 IPSRESWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTSEH 120 VPPPRPKRKA LHPYPQKAPK NVSAVSQVSG PFPSSSALLE PGCMYRPDSL SVVGNPIAPA 180 PMSSWSYNSV SPASMTQVTK GLAGPTIAHN CCYSSTNENA PRTWAIDKQV DQGDNGQPKR 240 VMPDFAQVYS FIGSVFDPNS SGHLEKLKQM DPIDMETVLL LMRNLSMNLR SPEFEDHRKL 300 LSSYDVNAKR GEVGGTCENL GTEKSRNAIL SAKKCLILTL NCYCQDEMID TSNKLTGVVA 360 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_184.27 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ381565 | 2e-78 | FQ381565.1 Vitis vinifera clone SS0ABP1YE10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887810.1 | 0.0 | LOW QUALITY PROTEIN: protein REVEILLE 5 | ||||
Swissprot | C0SVG5 | 3e-98 | RVE5_ARATH; Protein REVEILLE 5 | ||||
TrEMBL | A0A061DUW2 | 1e-161 | A0A061DUW2_THECC; Homeodomain-like superfamily protein | ||||
STRING | evm.model.supercontig_184.27 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 8e-90 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_184.27 |
Publications ? help Back to Top | |||
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