PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_173.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 533aa    MW: 60808.8 Da    PI: 4.5159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_173.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-172068450
                                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS
                        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50
                                  e k +r vtfskRr+g++ KA EL+vLC+a+v +++ ++  + k+y+++
  evm.model.supercontig_173.32 20 ETKEQRAVTFSKRRTGLFNKAAELCVLCNAQVVILVSAPlaKEKFYTFA 68
                                  67889*******************************9975578999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-21970IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.054969IPR002100Transcription factor, MADS-box
CDDcd002662.16E-211071No hitNo description
SuperFamilySSF554551.44E-191193IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-101131IPR002100Transcription factor, MADS-box
PfamPF003195.6E-162067IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-103146IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-104667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSATTCSSVK KRKIPMQKRE TKEQRAVTFS KRRTGLFNKA AELCVLCNAQ VVILVSAPLA  60
KEKFYTFAHP NINLLLDTFL NNHVSHPINN YNNLSTSSSY QNMEQLTPNN NVSKTKKRKR  120
ESEEFWWENE DFDVYQTPEE VTSIIEKLEK VRENVALKLQ KLSTSNNQDV SSSHHQNYHL  180
RCFAEDMMNI NNEYSKESGD QSQFMTSVVF QNLSTSTYHG SCIDQNIVDI DGFKNNVDFM  240
QMLPLKSTML THNTNNGSQD IQNYHNDMGT TFEAPLFFPN GVENYQDISS GDHQNYHLGC  300
FAENIMNINH EYNNESGDQS QFMPSVVFQN LSTSTYQDGC IDQNMVNVDG NKNNVAFMQM  360
LPLNSTMFTD NTNNGTQDIE NYHYDMGTTF EPPLFFSNGI ERCATSLCIG DQNFSWMNDK  420
ITTSYSQNEQ FSPSFSSNDL DHHINTSFEW EFRDENPSFL QDNATGLVPL FSHSDKGIDK  480
QNLSESNFKD NSFSVTGGTT YNDLFLGDDY VNSSTMEDNT EFFSLLESFF SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_173.32
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888217.10.0serum factor response D-like
STRINGevm.model.supercontig_173.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.11e-20AGAMOUS-like 55