PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_173.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 533aa    MW: 60410.2 Da    PI: 4.4307
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_173.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.8e-162068450
                                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS
                        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50
                                  e k +r vtfskR +g++ KA EL+vLC+a+v +++ ++  + k+y+++
  evm.model.supercontig_173.29 20 ETKKQRVVTFSKRGTGLFNKAAELCVLCNAQVVILVSAPlaKEKFYTFA 68
                                  67899*******************************9975578999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-17970IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.329969IPR002100Transcription factor, MADS-box
CDDcd002667.23E-181071No hitNo description
SuperFamilySSF554551.03E-171193IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-81131IPR002100Transcription factor, MADS-box
PfamPF003193.6E-142067IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-83146IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-84667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSATTCSSVK KRKIPTQKRE TKKQRVVTFS KRGTGLFNKA AELCVLCNAQ VVILVSAPLA  60
KEKFYTFAHP NINLLLDTFL NNHVSHPINN YNNLSTSSSH QNMEQLTPNN NVSKTKKRKR  120
ESEEFWGENE DFDVYQTPEE VTSIIEKLEN VRENVALKLQ KLSTSNNQDI NSSDHQNYHL  180
GCFAEDIMNI NNEYSKESGD QSQFMTSVVF QNLSTSTYHG SCIDQNIVDI DGFKNNVDFM  240
QMLPLKSTML THNTNNDSQD IENYHNDMGT TFEAPLFFSN GVENYQDIGS GDHQNYHLGC  300
FAENIMNISH EYNNESGDQS QFMSSVVFQN LSTSTYQDGC IDQNMVNVDG NKNNVAFMQM  360
LPLNSIMFTH NTNNGTQDIE NYHCDMGTTF EPPLFFSNGI ERCATSFCIG DQNFSWMNDK  420
ITTSYSQNEQ FSPSFSSDDL DHHINTSFEW EFRYENPSFL QDNATGLVPL FSHSDKGIDK  480
QNLSESNFKD NSFSVTGATT DNDLLLGDDY VNSSTMEDNT EFFSLLESFF SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_173.29
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888217.10.0serum factor response D-like
STRINGevm.model.supercontig_173.290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.14e-17AGAMOUS-like 55