PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_173.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 768aa    MW: 87591.6 Da    PI: 4.2387
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_173.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.92.4e-172068450
                                  -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS
                        SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50
                                  e k +r vtfskRr+g++ KA EL+vLC+++v +++ ++  + k+y+++
  evm.model.supercontig_173.23 20 ETKEQRAVTFSKRRTGLFNKAAELCVLCNTQVVILVSAPlaKEKFYTFA 68
                                  67889*******************************9975578999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.661969IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-20970IPR002100Transcription factor, MADS-box
CDDcd002662.00E-201071No hitNo description
SuperFamilySSF554558.5E-191090IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-91131IPR002100Transcription factor, MADS-box
PfamPF003193.4E-152067IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-93146IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-94667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MSATTCSSVK KRKIPMQKRE TKEQRAVTFS KRRTGLFNKA AELCVLCNTQ VVILVSAPLA  60
KEKFYTFAHP NINLLLDTFL NNHVSHPINN YNNLSTSSSH QTMEQLTPNN NVSKTKKRKR  120
ESEEFWWENE DFDVYQTPEE VTSIIEKLEK VRENVALKLQ KLSTSNNQDI NSSDHQNYHL  180
GCFAEDIMNI NNEYSKESGD QSQFMTSVVF QNLSTSTYHG SCIDQNIVDI DGFKNNVDFM  240
QMLPLKSTML THNTNNGSQD IENYHNDMGT TFEAPLFFSN GVENYQDISS GDHQNYHLGC  300
FAENIMNINH EYNNESGDQS QFMPSVVFQN LSTSTYQDGC IDQNMVNVDG NKNNVAFMQM  360
LPLNSTMFTH NTNNDTQDIE NYHYDMGTTF EPPLFFSNGV ENYQDISNDH QNYHLGCFAE  420
NIMNIDHEYN DESGDQSQFM SSVVFQNLST STYHGSCIDQ NIVDIDGFKN NVDFMQMLPL  480
KSTMLTHNTN NGSQDIQNYH NDMGTTFEAP LFFSNGVENY QDISSGDHQN YHLGCFAENI  540
MNINHEYNNE SGDQSQFMPS VVFQNLSTST YQDGCIDQNM VNVDGNKNNV AFMQMLPLNS  600
TMFTDNTNNG TQDIENYHYD MGTTFEPPLF FSNGIERCAT SLCIGDQNFS WMNDKITTSY  660
SQNEQFSPSF SSNDLDHHIN TSFEWEFRDE NPSFLQDNAT GLVPLFSHSD KSIDKQNLSE  720
SNFKDNNFSV TGATTDNDLF LGDDYVNSST MEDNTEFFSL LEYFFSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_173.23
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888216.10.0serum factor response D-like
STRINGevm.model.supercontig_173.230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-18AGAMOUS-like 55