PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 178aa    MW: 20556.6 Da    PI: 10.0502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.96.4e-133610370128
                          NAM  70 tgkrknratk....sgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                                  tg+r++r+++     g+W+a g dk+vl+++++++g+k++L+f       g++++  ++ W+mhey++
  evm.model.supercontig_17.29  36 TGTRPKRVVAgkdnGGFWRANGGDKPVLDSENKQIGVKRILTFVsfknrGGNREEIDNSYWIMHEYSF 103
                                  799999964445559*****************************76664467888889********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.4951119IPR003441NAC domain
SuperFamilySSF1019414.45E-245119IPR003441NAC domain
PfamPF023651.1E-138102IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTTISVQYGY RFDPTDEELI SYFLWKRIRA YLLPNTGTRP KRVVAGKDNG GFWRANGGDK  60
PVLDSENKQI GVKRILTFVS FKNRGGNREE IDNSYWIMHE YSFDSPTFQT WVLCRIKYKG  120
KDKGSNVRKR YVHNMKIVLE GENSKGFLER MNLEEEERWM RGLVVAGKGI LGMNCLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904761.11e-121NAC transcription factor 56-like
STRINGevm.model.supercontig_17.291e-129(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.19e-15vascular related NAC-domain protein 1