PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1453.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 388aa    MW: 44764.2 Da    PI: 6.6208
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1453.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.6e-2777158286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                                   W ++e++ Li++rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++e+      s ++ y+
  evm.model.supercontig_1453.1  77 WVQEETRSLIALRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKQQERTA---GSAKMLYY 154
                                   ********************************************************************84...55689999 PP

                      trihelix  83 dqle 86 
                                   +++e
  evm.model.supercontig_1453.1 155 KEIE 158
                                   9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.65369133IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.6E-570135IPR009057Homeodomain-like
SMARTSM007171.5E-573135IPR001005SANT/Myb domain
CDDcd122031.21E-2875140No hitNo description
PfamPF138375.1E-2076160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MYISEKPRPL DFYKEENTAS SRDMMIEVTA NGDLPPHHQH HHHPLSHPHQ HQQQMILGES  60
SSEDHEVKVP KKRAETWVQE ETRSLIALRR EMDGLFNTSK SNKHLWEQIS AKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAK QQERTAGSAK MLYYKEIEEI LRERTKSVQY KSPIPPAKVD  180
SYMQFSDKGF EDTSISFGPV EASGRSTLNL ERRLDHDGHP LAITAADAVA ASGVPPWNWR  240
ETPGSGGEEQ SFGGRVISVK FGNYTRRIGI DGTTEGIKEA IKSAFGLRTK RAFWLEDEEQ  300
IVRTLDRDMP LGNYTLQLDE GLAIKVCHYD ESDHLPVHTE ERIFYTEDDY RDFLVRRGWT  360
CLREFDGYRN VENMDDLQMG AIYRGVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4671156186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892610.10.0trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A067JSB40.0A0A067JSB4_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_1453.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]