PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1427.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 270aa    MW: 29624.8 Da    PI: 8.6068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1427.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-082646526
                                  --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                   C++f++ G Ck Gd C FaHg
  evm.model.supercontig_1427.1 26 ACPDFRK-GNCKKGDACEFAHG 46
                                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.456110IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-62147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7512248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-62548IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-62646IPR000571Zinc finger, CCCH-type
SMARTSM0035665679IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.9635680IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
TECPYAHPGE KARRRDPRKY HYSGTACPDF RKGNCKKGDA CEFAHGVFEC WLHPGRYRTQ  60
PCKDGPNCRR RVCFFAHSPE QLRVLPQQSP RSINSADSFD ASPLRQAIEA SCAMKLPFMS  120
SPGSVSPPTS PRGESPPMSP MPVSLSRSAG SCSIHEMVAS LRNLQLGKMK SLPSSWNVQV  180
GSPSGFGSPR GSLLRPGFCS LPATPTRAPA CPGIGYLDAW DKVCEEEPVM ERVESGRDLR  240
AKMFEKLSKE NLLDREEAPD VGWVSELIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892808.10.0zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-105C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2C9W5H31e-156A0A2C9W5H3_MANES; Uncharacterized protein
STRINGevm.model.supercontig_1427.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-90C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]