PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.76
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family E2F/DP
Protein Properties Length: 358aa    MW: 40685.9 Da    PI: 8.01
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.76genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.51.2e-192489171
                      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                                 rk++sL++l+ +flkl+ + e+  + l+e+a+eL        rRR+YD++N+Le+++++ k+ +n++ wkg
  evm.model.supercontig_14.76 24 RKKRSLKVLCANFLKLYDRDETCLIVLDEAASEL---GA--GRRRLYDVVNILESVGIVIKSGRNQYLWKG 89
                                 799*******************************...88..9***************************98 PP
2E2F_TDP61.41.4e-19159239171
                      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                                  +k++sL+ ltq+flkl+ + + +i+tl+++a +   e      +k+k+RR+YDi+N+L+ lnli+k     ++k ++rw g
  evm.model.supercontig_14.76 159 KKGRSLCFLTQNFLKLYLCCDIDIITLEDAAAQVFDEpdrltPIKTKVRRLYDIANILSCLNLIQKashpkSNKAAFRWVG 239
                                  6899******************************888*****8999********************999999999****87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-212191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-212489IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.8E-132487IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.8E-172589IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-16158239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-19159239IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-14161239IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.62E-9162240IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSQQLVDNTG EGETVFSDRE PYDRKKRSLK VLCANFLKLY DRDETCLIVL DEAASELGAG  60
RRRLYDVVNI LESVGIVIKS GRNQYLWKGY EAIPRVLKEL KEESVRKTIS LSDSRNSVQV  120
SCDDDDNGDS VNEKIDGEEN SSLSWITDMD VDLFNLRNKK GRSLCFLTQN FLKLYLCCDI  180
DIITLEDAAA QVFDEPDRLT PIKTKVRRLY DIANILSCLN LIQKASHPKS NKAAFRWVGW  240
RGKAFNSSGI ALYVNDMPNK RKFGTEVTNM NSKKKKAEVK PNSKSEEKEP SLIEYYRDNI  300
LKEMEKQNSD QRTKGKIVFG PFAPSTSMAP RQVQDSGDNN HQLSSTNTQR QYYNEGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-23242254222Transcription factor E2F8
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259275KRKFGTEVTNMNSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.76
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905327.10.0E2F transcription factor-like E2FF
STRINGevm.model.supercontig_14.760.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-74DP-E2F-like protein 3