PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.159
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 542aa    MW: 60285.6 Da    PI: 7.9553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.159genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000441032123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C  C+ksF++   L  H r H
  evm.model.supercontig_14.159 10 YPCRFCNKSFPTGKALGGHVRGH 32
                                  99************999999987 PP
2zf-C2H213.70.0001882103223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C+ Cgk F +   L  H+r H
  evm.model.supercontig_14.159  82 TCKVCGKEFGSMRALFGHMRHH 103
                                   6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-4532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-5635No hitNo description
SMARTSM003550.0521032IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-61032IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8681037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003550.01481103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.46881108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-482105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-882133No hitNo description
PfamPF139121.1E-683105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556111138IPR007087Zinc finger, C2H2
SMARTSM003550.12111133IPR015880Zinc finger, C2H2-like
PfamPF139120.028111131IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-8391413No hitNo description
SMARTSM003550.03391413IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-9391414IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762391418IPR007087Zinc finger, C2H2
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-8463490No hitNo description
SMARTSM003550.77468490IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9468492IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972468495IPR007087Zinc finger, C2H2
PROSITE patternPS000280470491IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQKDQEEKNY PCRFCNKSFP TGKALGGHVR GHLAANSIKD EEIHNKRNVG YALRKKSQKS  60
WKFSSANHNS GSASSSTIHE NTCKVCGKEF GSMRALFGHM RHHSGKDKKG FHCKECGQEL  120
QSLRALTSHV TLHLGVPNES RTSSSNSLIV ESLTYNDTAN LAQRKRSKRM RYKSTPTSSF  180
SSFNESSSVT EIEEEVEDVA NCLMMLSKGV GNWGRFNFVF TQNNLIGDSP GNVSLTSEAK  240
SIYQNKGIQK NESSFACADD QIFRKRRLKE KLGSSVPDSF NGNGDKKTKE WIEFGVGIEE  300
KKPELEVPME ICRELEMPNL NDDESGFVTY DTEIEKKVLS EMKLKDSVKS SSWKDAGFDY  360
YDTELGINSF GKTLSSSESG ILDDSRKKAE FQCRVCNKVF HSYQALGGHQ TLHRPNKACI  420
SLKIDNEKNL QLEVLPEIEI SGKFEAIENS IGQEINGGTV RLREGKEHKC PVCFKLFTSG  480
QALGGHKRAH HSKNSKARGE QVAMQQDFSG VHSVLDLNLP AMVDEEGNGD VLASNQCGFE  540
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905274.10.0zinc finger protein 197
STRINGevm.model.supercontig_14.1590.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Representative plantOGRP1487534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-24C2H2-like zinc finger protein