PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_131.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Dof | ||||||||
Protein Properties | Length: 234aa MW: 25049.6 Da PI: 8.3649 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.4 | 4.1e-40 | 19 | 79 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s evm.model.supercontig_131.40 19 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGSRKNTKRS 79 57899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 14 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-33 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.45 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MQDPASTFHQ AMMKPQFPEQ EQLKCPRCDS NNTKFCYYNN YNLSQPRHFC KSCRRYWTKG 60 GALRNIPVGG GSRKNTKRSS NNPKRHANSS DPNPTRKAPE PAPPSLSTAT SQQMASNQGV 120 LGSGLDQDPN RVYGLSVEQD RKVLDMGMNG SFSSLLASNG QFGSILEGLN PNGSSLKMVQ 180 MGDLGENLGS GHGLDLVSDS GIGLQGNNNG NDNGGGESYC WSGSSNGWPD LAI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_131.40 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857273 | 2e-34 | DQ857273.1 Glycine max Dof22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890177.1 | 1e-172 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 1e-46 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | B9MWQ5 | 3e-87 | B9MWQ5_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_131.40 | 1e-171 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-49 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_131.40 |
Publications ? help Back to Top | |||
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