PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1307.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 235aa MW: 26013.2 Da PI: 7.4418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1307.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H evm.model.supercontig_1307.1 79 FECHYCFRNFPTSQALGGHQNAH 101 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.44E-6	76	107	No hit	No description
Pfam	PF13912	1.8E-5	78	103	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.99	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010026	Biological Process	trichome differentiation
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGKNTSSSEQ ETHDFMNVES FSQLPFIRPN PVKEKGIRLF GIEFGADEVP AEDSDRPENN 60 NAHQENLKEA ESGDNSRRFE CHYCFRNFPT SQALGGHQNA HKRERQHAKR QNLQTAMVNS 120 SFSDAHHIYG LMNYRIGSTP SPGAVSTYPP WNTNINGGAA RFYGATSHGS FTQTPINGSP 180 LGMWRIPAAV QSSTSNSSFN RDLSSSHQLF AGDFDHHRQL KPPVQIIGGS SSQSX

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:17507408, ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1307.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. {ECO:0000269\|PubMed:17507408}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893672.1	1e-175	zinc finger protein 8-like
Swissprot	P93751	4e-43	ZFP8_ARATH; Zinc finger protein 8
TrEMBL	A0A061EWT6	5e-89	A0A061EWT6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	evm.model.supercontig_1307.1	1e-175	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2495	19	49
Representative plant	OGRP2859	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	3e-44	zinc finger protein 8

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1307.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859] Kim SY,Hyoung S,So WM,Shin JS The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling. Plant Mol. Biol., 2018. 96(3): p. 315-326 [PMID:29335898]