PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_127.27
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 294aa    MW: 33706.7 Da    PI: 9.083
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_127.27genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30114173159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a  Cpvkkkv+rs ed ++++ tYegeHnh+
  evm.model.supercontig_127.27 114 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApACPVKKKVQRSLEDSSILIATYEGEHNHD 173
                                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-29108173IPR003657WRKY domain
SuperFamilySSF1182902.35E-25111174IPR003657WRKY domain
SMARTSM007741.0E-34114174IPR003657WRKY domain
PfamPF031066.6E-25115173IPR003657WRKY domain
PROSITE profilePS5081126.062116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDVVDSISRR KKALIGELEN LRKENESLKW LLEVLNSKYS MLEAQVKQTC SSNNNNNNNN  60
RRRRHHHKNT DEDQQQVVDC SYYEPNKRPR TQLQLQKPSQ IFVRTHPKDK TLSVKDGYQW  120
RKYGQKVTKD NPSPRAYFRC SMAPACPVKK KVQRSLEDSS ILIATYEGEH NHDIHGQNLY  180
LQGNSIDTNN PTSSLITNFP YPLRVNPFER CITLDLALSP AGSTQHHDHH HHQYAKPTQN  240
NSIPDDNDNN NLEMKTKSEE EMMESLTKDP NFILSLASAV ARSITQSPKS TAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-221141741473WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_127.27
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890657.10.0probable WRKY transcription factor 40
STRINGevm.model.supercontig_127.270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Representative plantOGRP1149547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-39WRKY DNA-binding protein 40