PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.156
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 418aa    MW: 47979.4 Da    PI: 4.522
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.156genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.5e-2061223128
                           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                    Gf+F P+deel  + L  k++g+       ++evd y+ ePw      k+e +  y F++ +kk  + +r +r++  g+W
  evm.model.supercontig_12.156   6 IGFHFTPSDEELF-QILGMKLRGEYEG--GGVTEVDPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SRSRMERKVGCGTW 79 
                                   6***********9.88*****999844..46************995.2.2344455666666665..568*********** PP

                           NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   k   +  ev++ +++++g kk+L+f  ++++++e+ +W+mhey+l
  evm.model.supercontig_12.156  80 KMERS-VEVVDWEENVIGFKKMLTFE-EKKKNTENGRWIMHEYSL 122
                                   *8877.555566999**********8.5666779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.9274136IPR003441NAC domain
SuperFamilySSF1019416.15E-236136IPR003441NAC domain
PfamPF023655.7E-146122IPR003441NAC domain
PfamPF066446.3E-14333408IPR010591ATP11
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006461Biological Processprotein complex assembly
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDVARIGFHF TPSDEELFQI LGMKLRGEYE GGGVTEVDPY EKEPWLVFDK NEPTTFYVFT  60
SLKKKSRSRM ERKVGCGTWK MERSVEVVDW EENVIGFKKM LTFEEKKKNT ENGRWIMHEY  120
SLRDFDNYVL CKIRNKSIDK LQQPTKIKFV YHQQDNSNNT HKRKLSADTE DHNQNKIQCI  180
NSSFVMSTTG DVRIVEEMII TAPLAAGDVN PFTAAALLAT EYNNRELVEE MTVAEPLASE  240
DINPLATVAP LTIEYNDREV VEEMTITAPL VARDINPLAT AAPLAAKYND GEIAEEMTVA  300
TPLRNEVEQN DNLVFDIDEL WKEIDRKDNL IARGTQAAPY LTATFYTEFA ETKDLVLIRG  360
DVVFTSKLTD EEAKWLLETV QSLYLNDTIY KLVERFNKET RDFEFKDVLR ALDMPVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911077.10.0NAC domain-containing protein 55-like, partial
STRINGevm.model.supercontig_12.1560.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.22e-13NAC domain containing protein 50