PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_119.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 292aa    MW: 32769.6 Da    PI: 9.1579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_119.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182471148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEdell+d++k+ G g+W+t +++ g+ R++k+c++rw +yl
  evm.model.supercontig_119.55 24 RGPWTPEEDELLADYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 71
                                  89******************************99************97 PP
2Myb_DNA-binding47.25.2e-1582122648
                                   HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.supercontig_119.55  82 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 122
                                   89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-221573IPR009057Homeodomain-like
PROSITE profilePS5129416.9741971IPR017930Myb domain
SuperFamilySSF466892.68E-2921118IPR009057Homeodomain-like
SMARTSM007176.8E-142373IPR001005SANT/Myb domain
PfamPF002493.5E-162471IPR001005SANT/Myb domain
CDDcd001671.70E-112671No hitNo description
PROSITE profilePS5129424.39772126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2474127IPR009057Homeodomain-like
SMARTSM007172.7E-1376124IPR001005SANT/Myb domain
CDDcd001672.64E-1182122No hitNo description
PfamPF002498.6E-1482122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKNPVGGKID GNTTPCCSKV GLKRGPWTPE EDELLADYIK KEGEGRWRTL PKKAGLLRCG  60
KSCRLRWMNY LRPSVKRGQI APDEEDLILR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT  120
HLSKKLISQG IDPRTHKPFL HYQSQNSSSL PANYKPPSSS SSSRPKRKQH KQHLRQLSRH  180
YSNKPNNDNT NTDPVLLSSS SAETCNADNG GTSTRHEDDR VMTKETGYEF NGGGGPLVDH  240
GHSSLMNYEE DSVMIMKSNN GEDKEGSFCN EDIFSSFLNS LINEDPFASQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25221265108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_119.55
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891129.10.0transcription repressor MYB5
SwissprotQ388506e-81MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A061EW761e-100A0A061EW76_THECC; Myb domain protein 5 isoform 1
TrEMBLA0A061F2Z91e-100A0A061F2Z9_THECC; Myb domain protein 5 isoform 2 (Fragment)
TrEMBLM5VYH31e-100M5VYH3_PRUPE; Uncharacterized protein
STRINGevm.model.supercontig_119.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-81myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]