PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1153.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25281 Da    PI: 9.599
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1153.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-181150342
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  i+++s r++tf kR++g++KKA+EL +LC++  +++ifs+
  evm.model.supercontig_1153.1 11 ISDESTRKTTFMKRKKGLMKKASELATLCGISLCMMIFSP 50
                                  99*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.498149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-21160IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-23495IPR002100Transcription factor, MADS-box
CDDcd002664.15E-25485No hitNo description
PfamPF003193.4E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKGRKVKLAL ISDESTRKTT FMKRKKGLMK KASELATLCG ISLCMMIFSP YKTQPEVWPS  60
PSGVQSVLNN FKAMSNGDQR KKMLNQETYL RKSIEKVNDQ LNKLCKANRD KEITQFMCES  120
LKGNPLTNLT AKDLKDLDSK VKYFSKDIDE MIDRLVTINQ NFENAQTKTS EIDLNDGNNI  180
QNSLKNHSWL MELGFGKMIM PIEENNKGNI DNNNNNDDNG AI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898171.11e-114agamous-like MADS-box protein AGL80
STRINGevm.model.supercontig_1153.11e-161(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-38AGAMOUS-like 80