PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_113.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 669aa    MW: 76297.9 Da    PI: 7.5487
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_113.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.2e-2062155190
                         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwev 78 
                                  ++Y+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a l+++k +     +w+v
  evm.model.supercontig_113.2  62 EYYSEFAKRCGFSIRRHRTEGKdGIGKGLTRRYFVCHRAGNTPVKTSSESKPQRNRKSSRCGCQAYLRISKITelgATEWRV 143
                                  69*************999887735667799**************9999999********************9988889**** PP

                         FAR1  79 tkleleHnHela 90 
                                  t + ++HnHel 
  evm.model.supercontig_113.2 144 TGFANHHNHELL 155
                                  **********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-1762155IPR004330FAR1 DNA binding domain
PfamPF105514.8E-19278368IPR018289MULE transposase domain
PfamPF044342.2E-7553586IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.718556589IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MSDEAGQILM VYDDPSDQRS LSLDDTSSTE ESPDEITFSL ESANDAVPYI GQTFPTHDAA  60
YEYYSEFAKR CGFSIRRHRT EGKDGIGKGL TRRYFVCHRA GNTPVKTSSE SKPQRNRKSS  120
RCGCQAYLRI SKITELGATE WRVTGFANHH NHELLEPNQV RFLPAYRTIS DADKSRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KSDPEDEGID LLRMCRNIKE  240
KDPNFKFEYT LDANSRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGIN  300
NYGMPCFFGC VLLREENLRS LSWALKAFIG FMNGKAPHTI LTDQNMCLKE AIAMEMPASK  360
HALCIWMIVG KFPSWFNAVL GERYNEWKAE FYRLYNLESI EDFELGWRDM VNSFGLHTNR  420
HIANLFALRS LWALPYLRSH FFAGMTTAGQ SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAAEQQT MQQNLQNICL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQLEDG  540
FLVRHHTKLD GGRKVYWVPQ EGIISCSCQQ FEFSGILCRH ALRILSTGNC FQIPDRYLPL  600
RWRRISSSSA RPMQNNPNDH AERVQLLQSM VSTLVAESSK SKERVDIATE QVSILLSRIR  660
EQPVLHKV*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_113.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891635.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_021891636.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_021891637.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2R6RGG20.0A0A2R6RGG2_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGevm.model.supercontig_113.20.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]