PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_113.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 383aa    MW: 43954.7 Da    PI: 4.4348
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_113.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.65.3e-32191551128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknr 76 
                                   lppG+ F+Ptd+ lv ++L++k++gk+ +l ++ i ++d+y ++P  Lp   +   +++  y+Fs+r+k +a  + +r++r
  evm.model.supercontig_113.19  19 LPPGVTFNPTDQHLVAYFLRNKIHGKQAHLLNIfIIDADVYASHPAVLPwGfHPGLTSSYRYYFSRRHKVSAncNANRPKR 99 
                                   79*************************9998888***************432333345577******9998844588**** PP

                           NAM  77 atksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                                   +++ g W++   dk++++ +g+++g kktL f      ++++++++kt W+mheyrl
  evm.model.supercontig_113.19 100 TVDCGWWRSDTGDKDIMR-RGKVIGRKKTLSFLvykdpSKKRKEAQKTGWIMHEYRL 155
                                   ******************.999**********8888876888899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3816171IPR003441NAC domain
PROSITE profilePS5100539.92419171IPR003441NAC domain
PfamPF023659.2E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
METSRNDDFD FEEEELLGLP PGVTFNPTDQ HLVAYFLRNK IHGKQAHLLN IFIIDADVYA  60
SHPAVLPWGF HPGLTSSYRY YFSRRHKVSA NCNANRPKRT VDCGWWRSDT GDKDIMRRGK  120
VIGRKKTLSF LVYKDPSKKR KEAQKTGWIM HEYRLAEDSF QEWVLCKIYN KASKKNKNLE  180
IETADSPISE TTAILSEDQP ESTLVETDNQ YGGSDNTPQN VECSYREEDL TDRVSLFWCD  240
NEQPESTLVE TDYQYGGPDS TPQNVDERSH TEEINGWVSS VLRDNEQPES TLVGTDNQYG  300
GSDSTHQNVD DRSYAEEIDW VSSVLRDYEQ PESTSVETDH QYGGSDSTHQ NVDERSYAEE  360
INDWVSSVLR DNEQNIHDLQ SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-221717718174NAC domain-containing protein 19
3swm_B2e-221717718174NAC domain-containing protein 19
3swm_C2e-221717718174NAC domain-containing protein 19
3swm_D2e-221717718174NAC domain-containing protein 19
3swp_A2e-221717718174NAC domain-containing protein 19
3swp_B2e-221717718174NAC domain-containing protein 19
3swp_C2e-221717718174NAC domain-containing protein 19
3swp_D2e-221717718174NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123140RKKTLSFLVYKDPSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_113.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891640.10.0NAC domain-containing protein 79-like
STRINGevm.model.supercontig_113.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-20NAC domain containing protein 19