PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_112.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 483aa    MW: 52722.9 Da    PI: 6.1918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_112.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-07272292526
                                  --SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                  +C+ f++ G C+ Gd C +aHg
  evm.model.supercontig_112.6 272 PCPEFRK-GSCRQGDACEYAHG 292
                                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.1E-1728175IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.52E-1528150IPR020683Ankyrin repeat-containing domain
SMARTSM002485.0E-472102IPR002110Ankyrin repeat
PROSITE profilePS5029716.20272147IPR020683Ankyrin repeat-containing domain
PfamPF136374.3E-1073131No hitNo description
CDDcd002044.05E-974147No hitNo description
SMARTSM002480.067107139IPR002110Ankyrin repeat
PROSITE profilePS5008811.434107142IPR002110Ankyrin repeat
SMARTSM003561.0E-4267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4270294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662272294IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4272292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4300330IPR000571Zinc finger, CCCH-type
SMARTSM0035625302325IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174302326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MCSGSKRKPT QTGYIMEGKE DGFSFNFSVL LEFAAANDLT GFKTAIEEMG LDIDKSTLWY  60
GRRIGSKKMA FEERTPLMIA AMFGSKDVLN YIIESGGVDV NRVCGSDGAT ALHCAAAGGS  120
AASPEVVKVL LAASADASVL DASGNRPGDL IAPVCDLAFS SRKKTLEVLL KGASGVEETY  180
DLPDKVVNET DVQEQLEIST PKVSEKKEYP VDLTLPDIKN GIYGTDEFRM YTFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGS CRQGDACEYA HGIFECWLHP  300
AQYRTRLCKD ETNCTRRVCF FAHKPEELRP LYTSTGSGVP SPRSYSASGS SLDLGSISPL  360
ALDSPSVIIP PTSTPPLTPS GASSPRGGNM WQTQSSFVPP TLQLPGSRLK SAISARDMDL  420
DIDLLNLESQ RRRQQQQQQL IDEISGLSSP SSWNNGFTSA SSFSPSVDRS GELNRLXXXX  480
XX*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_112.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891740.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1R3J6F00.0A0A1R3J6F0_9ROSI; Zinc finger, CCCH-type
STRINGevm.model.supercontig_112.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-162C3H family protein